document.querySelectorAll('.menu a').forEach(link => { link.addEventListener('click', () => { var navbar = document.getElementById("navbar"); if (navbar.classList.contains('responsive')) { navbar.classList.remove('responsive'); } }); });

EpiMethEx 2.0 Download & Links

Download EpiMethEx 2.0 datasets and results of TCGA analysis on Zenodo Dataset Collection

The list of datasets available on Zenodo incudes:
  • CG probeset Illumina annotation matrix: Annotated probesets with corrected mismatches between CG sites and gene IDs.
  • DNA methylation datasets: Methylation450k data from TCGA tumors and pooled normal samples (NormalPool).
  • Gene expression datasets: IlluminaHiSeq gene expression (log2(norm_count+1)) for tumors and NormalPool; corrected gene identifiers.
  • CG cluster annotations: Clustered CG sites by genomic location, RefGene Name, and RefGene Accession (based on ≤200 bp proximity).
  • Single CG methDNA, corr, and betaDiff median values (all samples):
    • methDNAmedianAll: Median methylation per CG site
    • betaDiffmedianAll: Tumor vs NormalPool beta differences
    • CorrMedianAll: Correlation between methylation and gene expression
  • Differential analysis of gene expression (Tumors vs NormalPool): Differential expression statistics for each TCGA tumor type.
  • methDNA, Corr, betaDiff, and integrated CG clusters: CG site clusters with consistent methylation, correlation, and beta difference profiles. NormalPool excluded for betaDiff and integrated clusters.

Download EpiMethEx 2.0 package on GitHub-EpiMethEx-2.0

scandido@unict.it

Dept. Biometec - Unict,
Via Santa Sofia, 97, Catania, Italy

+39 095 478 1482