Download EpiMethEx 2.0 datasets and results of TCGA analysis on Zenodo Dataset Collection

The list of datasets available on Zenodo incudes:

• CG probeset Illumina annotation matrix: Annotated probesets with corrected mismatches between CG sites and gene IDs.
• DNA methylation datasets: Methylation450k data from TCGA tumors and pooled normal samples (NormalPool).
• Gene expression datasets: IlluminaHiSeq gene expression (log2(norm_count+1)) for tumors and NormalPool; corrected gene identifiers.
• CG cluster annotations: Clustered CG sites by genomic location, RefGene Name, and RefGene Accession (based on ≤200 bp proximity).
• Single CG methDNA, corr, and betaDiff median values (all samples):
  • methDNAmedianAll: Median methylation per CG site
  • betaDiffmedianAll: Tumor vs NormalPool beta differences
  • CorrMedianAll: Correlation between methylation and gene expression
• Differential analysis of gene expression (Tumors vs NormalPool): Differential expression statistics for each TCGA tumor type.
• methDNA, Corr, betaDiff, and integrated CG clusters: CG site clusters with consistent methylation, correlation, and beta difference profiles. NormalPool excluded for betaDiff and integrated clusters.

Download EpiMethEx 2.0 package on GitHub-EpiMethEx-2.0